OCA Atlas for 4LCD

4LCD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
B, A

Primary reference

Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3., Kamadurai HB, Qiu Y, Deng A, Harrison JS, Macdonald C, Actis M, Rodrigues P, Miller DJ, Souphron J, Lewis SM, Kurinov I, Fujii N, Hammel M, Piper R, Kuhlman B, Schulman BA, Elife. 2013 Aug 8;2:e00828. doi: 10.7554/eLife.00828. Print 2013. PMID:23936628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]

Biological Unit Coordinates (4lcd.pdb1.gz) 170 Kb

Biological Unit Coordinates (4lcd.pdb2.gz) 166 Kb

CSU: Contacts of Structural Units for 4LCD

Structure Factors (381 Kb)

Retrieve 4LCD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4LCD from S2C, [Save to disk]

Re-refined 4lcd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4LCD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4lcd] [4lcd_A] [4lcd_B] [4lcd_C] [4lcd_D] [4lcd_E] [4lcd_F]

SWISS-PROT database:

Domains found in 4LCD: [HECTc] [UBQ] [WW ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]