OCA Atlas for 4LD7

4LD7

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NA, PIS

enzyme

Gene

NFIA

Gene
Ontology

Chain	Function	Process	Component
B, H, P, L, F, E, J, O, N, I, D, C, G, M, A, K

Primary reference

Catalytic Mechanism of Stereospecific Formation of cis-Configured Prenylated Pyrroloindoline Diketopiperazines by Indole Prenyltransferases., Yu X, Zocher G, Xie X, Liebhold M, Schutz S, Stehle T, Li SM, Chem Biol. 2013 Nov 12. pii: S1074-5521(13)00364-5. doi:, 10.1016/j.chembiol.2013.10.007. PMID:24239009

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2024 Kb) [Save to disk]

Biological Unit Coordinates (4ld7.pdb1.gz) 506 Kb

Biological Unit Coordinates (4ld7.pdb2.gz) 511 Kb

Biological Unit Coordinates (4ld7.pdb3.gz) 515 Kb

Biological Unit Coordinates (4ld7.pdb4.gz) 513 Kb

LPC: Ligand-Protein Contacts for 4LD7

CSU: Contacts of Structural Units for 4LD7

Structure Factors (1299 Kb)

Retrieve 4LD7 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4LD7 from S2C, [Save to disk]

Re-refined 4ld7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4LD7 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ld7] [4ld7_A] [4ld7_B] [4ld7_C] [4ld7_D] [4ld7_E] [4ld7_F] [4ld7_G] [4ld7_H] [4ld7_I] [4ld7_J] [4ld7_K] [4ld7_L] [4ld7_M] [4ld7_N] [4ld7_O] [4ld7_P]

SWISS-PROT database:

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