4LF5 Crystal Structure of 30S ribosomal subunit from Thermus thermophilus date
authors Demirci, H., Belardinelli, R., Carr, J., IV, F.Murphy., Jogl, G., Dahlberg, A.E., Gregory, S.T.
compound source
symmetry
R_factor
R_Free 0.2184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.75
ligand 0TD, 2MG, 4OC, 5MC, 7MG, HYG, K, M2G, MG, PSU, UR3, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2269 Kb) [Save to disk]
  • Biological Unit Coordinates (4lf5.pdb1.gz) 2235 Kb
  • LPC: Ligand-Protein Contacts for 4LF5
  • CSU: Contacts of Structural Units for 4LF5
  • Structure Factors (1515 Kb)
  • Retrieve 4LF5 in mmCIF format [Save to disk]
  • Re-refined 4lf5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LF5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LF5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LF5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lf5_A] [4lf5_I] [4lf5_U] [4lf5_M] [4lf5_H] [4lf5] [4lf5_R] [4lf5_P] [4lf5_N] [4lf5_K] [4lf5_T] [4lf5_Q] [4lf5_S] [4lf5_L] [4lf5_D] [4lf5_C] [4lf5_E] [4lf5_J] [4lf5_B] [4lf5_O] [4lf5_G] [4lf5_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LF5: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 4LF5
  • Community annotation for 4LF5 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science