4LFG Crystal structure of geranylgeranyl diphosphate synthase sub1274 (target efi-509455) from streptococcus uberis 0140j with bound magnesium and isopentyl diphosphate, fully liganded complex; date
authors Patskovsky, Y., Toro, R., Bhosle, R., Hillerich, B., Seidel, R.D., Washington, E., Glenn, A.Scott., Chowdhury, S., Evans, B., Hammonds, J., Imker, H.J., Obaidi, N.Al., Stead, M., Love, J., Poulter, C.D., Gerlt, J.A., Almo, S.C., EFI, Enzyme.Function.Initiative.
compound source
symmetry
R_factor
R_Free 0.18354
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.76
ligand IPE, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (4lfg.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 4LFG
  • CSU: Contacts of Structural Units for 4LFG
  • Structure Factors (891 Kb)
  • Retrieve 4LFG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LFG from S2C, [Save to disk]
  • Re-refined 4lfg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LFG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LFG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LFG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lfg_B] [4lfg] [4lfg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4LFG
  • Community annotation for 4LFG at PDBWiki (http://pdbwiki.org)

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