4LG8 Crystal structure of PRPF19 WD40 repeats date
authors Xu, C., Tempel, W., He, H., Dobrovetsky, E., Seitova, A., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Min, J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.1968
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.89
ligand NA, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the WD40 domain of human PRPF19., Zhang Y, Li Y, Liang X, Zhu Z, Sun H, He H, Min J, Liao S, Liu Y, Biochem Biophys Res Commun. 2017 Nov 25;493(3):1250-1253. doi:, 10.1016/j.bbrc.2017.09.145. Epub 2017 Sep 28. PMID:28962858
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4lg8.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 4LG8
  • CSU: Contacts of Structural Units for 4LG8
  • Structure Factors (3363 Kb)
  • Retrieve 4LG8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LG8 from S2C, [Save to disk]
  • Re-refined 4lg8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LG8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LG8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LG8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lg8] [4lg8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LG8: [WD40 ] by SMART
    • Other resources with information on 4LG8
  • Community annotation for 4LG8 at PDBWiki (http://pdbwiki.org)

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