4LOX Hydrolase Dna date Jul 14, 2013
title Crystal Structure Of The I-Smami Laglidadg Homing Endonuclea To Cleaved Dna
authors J.Chik, B.Shen, B.Stoddard
compound source
Molecule: Laglidadg Homing Endonuclease I-Smami
Chain: A
Fragment: Lhe Homing Endnuclease, Unp Residues 114-415
Engineered: Yes
Organism_scientific: Sordaria Macrospora
Organism_taxid: 771870
Strain: Atcc Mya-333 Dsm 997 K(L3346) K-Hell
Gene: Cytochrome C Oxidase Subunit 1, Mitochondrial Introne Smac_12671;
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3), Irl+
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15

Molecule: Dna (5'-D(Cpgptpapcpapcpcptpgpaptpap
Chain: B
Fragment: Product Of Lhe Cleavage
Engineered: Yes

Synthetic: Yes

Molecule: Dna (5'-D(Ptpgpgpapgpgpaptpapcpc)-3')
Chain: C
Fragment: Product Of Lhe Cleavage
Engineered: Yes

Synthetic: Yes

Molecule: Dna (5'-D(Gpgptpaptpcpcptpcpcpaptptp 3');
Chain: D
Fragment: Product Of Lhe Cleavage
Engineered: Yes

Synthetic: Yes

Molecule: Dna (5'-D(Pcpapgpgptpgptpapcpg)-3')
Chain: E
Fragment: Product Of Lhe Cleavage
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.284 67.429 98.090 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand MG enzyme
Gene SMAC
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (4lox.pdb1.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 4LOX
  • CSU: Contacts of Structural Units for 4LOX
  • Structure Factors (468 Kb)
  • Retrieve 4LOX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LOX from S2C, [Save to disk]
  • Re-refined 4lox structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LOX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LOX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LOX, from MSDmotif at EBI
  • Fold representative 4lox from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lox_A] [4lox_C] [4lox_E] [4lox] [4lox_D] [4lox_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4LOX
  • Community annotation for 4LOX at PDBWiki (http://pdbwiki.org)

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