4LQD The crystal structures of the Brucella protein TcpB and the TLR adaptor protein TIRAP show structural differences in microbial TIR mimicry date 2013-07-17
authors Snyder, G.A., Smith, P., Jiang, J., Xiao, T.S.
compound source
symmetry
R_factor
R_Free 0.2182
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.45
ligand CME, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the Toll/Interleukin-1 receptor (TIR) domains from the Brucella protein TcpB and host adaptor TIRAP reveal mechanisms of molecular mimicry., Snyder GA, Deredge D, Waldhuber A, Fresquez T, Wilkins DZ, Smith PT, Durr S, Cirl C, Jiang J, Jennings W, Luchetti T, Snyder N, Sundberg EJ, Wintrode P, Miethke T, Xiao TS, J Biol Chem. 2014 Jan 10;289(2):669-79. doi: 10.1074/jbc.M113.523407. Epub 2013, Nov 25. PMID:24275656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (4lqd.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 4LQD
  • CSU: Contacts of Structural Units for 4LQD
  • Structure Factors (174 Kb)
  • Retrieve 4LQD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LQD from S2C, [Save to disk]
  • Re-refined 4lqd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LQD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LQD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LQD, from MSDmotif at EBI
  • Fold representative 4lqd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lqd_A] [4lqd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4LQD
  • Community annotation for 4LQD at PDBWiki (http://pdbwiki.org)

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