4M11 Crystal Structure of Murine Cyclooxygenase-2 Complex with Meloxicam date 2013-08-02
authors Xu, S., Banerjee, S., Hermanson, D.J., Marnett, L.J.
compound source
symmetry
R_factor
R_Free 0.2306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.45
ligand BOG, HEM, MXM, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • peroxidase activity


    • Primary referenceOxicams Bind in a Novel Mode to the Cyclooxygenase Active Site via a Two-water-mediated H-bonding Network., Xu S, Hermanson DJ, Banerjee S, Ghebreselasie K, Clayton GM, Garavito RM, Marnett LJ, J Biol Chem. 2014 Jan 14. PMID:24425867
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (772 Kb) [Save to disk]
  • Biological Unit Coordinates (4m11.pdb1.gz) 379 Kb
  • Biological Unit Coordinates (4m11.pdb2.gz) 377 Kb
  • LPC: Ligand-Protein Contacts for 4M11
  • CSU: Contacts of Structural Units for 4M11
  • Structure Factors (992 Kb)
  • Retrieve 4M11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M11 from S2C, [Save to disk]
  • Re-refined 4m11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4M11
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M11, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m11_A] [4m11_C] [4m11] [4m11_D] [4m11_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4M11: [EGF ] by SMART
    • Other resources with information on 4M11
  • Community annotation for 4M11 at PDBWiki (http://pdbwiki.org)

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