4M1D date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL enzyme
Primary referenceThermodynamic Signatures of the Antigen Binding Site of mAb 447-52D Targeting the Third Variable Region of HIV-1 gp120., Killikelly A, Zhang HT, Spurrier B, Williams C, Gorny MK, Zolla-Pazner S, Kong XP, Biochemistry. 2013 Aug 23. PMID:23944979
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (4m1d.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (4m1d.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 4M1D
  • CSU: Contacts of Structural Units for 4M1D
  • Structure Factors (1164 Kb)
  • Retrieve 4M1D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M1D from S2C, [Save to disk]
  • Re-refined 4m1d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4M1D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m1d] [4m1d_H] [4m1d_I] [4m1d_L] [4m1d_M] [4m1d_P] [4m1d_Q]
  • SWISS-PROT database:
  • Domains found in 4M1D: [IG_like] [IGv ] by SMART

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