OCA Atlas for 4M4R

4M4R

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
G, E, C, A
H, B, F, D

Primary reference

Insights into Eph receptor tyrosine kinase activation from crystal structures of the EphA4 ectodomain and its complex with ephrin-A5., Xu K, Tzvetkova-Robev D, Xu Y, Goldgur Y, Chan YP, Himanen JP, Nikolov DB, Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14634-9. doi:, 10.1073/pnas.1311000110. Epub 2013 Aug 19. PMID:23959867

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (895 Kb) [Save to disk]

Biological Unit Coordinates (4m4r.pdb1.gz) 228 Kb

Biological Unit Coordinates (4m4r.pdb2.gz) 224 Kb

Biological Unit Coordinates (4m4r.pdb3.gz) 227 Kb

Biological Unit Coordinates (4m4r.pdb4.gz) 227 Kb

LPC: Ligand-Protein Contacts for 4M4R

CSU: Contacts of Structural Units for 4M4R

Structure Factors (1758 Kb)

Retrieve 4M4R in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4M4R from S2C, [Save to disk]

Re-refined 4m4r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4M4R in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4m4r] [4m4r_A] [4m4r_B] [4m4r_C] [4m4r_D] [4m4r_E] [4m4r_F] [4m4r_G] [4m4r_H]

SWISS-PROT database:

Domains found in 4M4R: [EPH_lbd] [Ephrin_rec_like] [FN3 ] by SMART

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