4M7D Crystal structure of Lsm2-8 complex bound to the RNA fragment CGUUU date 2013-08-12
authors Zhou, L., Hang, J., Zhou, Y., Wan, R., Lu, G., Yan, C., Shi, Y.
compound source
symmetry
R_factor
R_Free 0.2828
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.59
Gene
Ontology
ChainFunctionProcessComponent
A, H


B, I


E, L


F, M


J, C


K, D


N, G


Primary referenceCrystal structures of the Lsm complex bound to the 3' end sequence of U6 small nuclear RNA., Zhou L, Hang J, Zhou Y, Wan R, Lu G, Yin P, Yan C, Shi Y, Nature. 2013 Nov 17. doi: 10.1038/nature12803. PMID:24240276
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (365 Kb) [Save to disk]
  • Biological Unit Coordinates (4m7d.pdb1.gz) 182 Kb
  • Biological Unit Coordinates (4m7d.pdb2.gz) 177 Kb
  • CSU: Contacts of Structural Units for 4M7D
  • Structure Factors (694 Kb)
  • Retrieve 4M7D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4M7D from S2C, [Save to disk]
  • Re-refined 4m7d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4M7D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4M7D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4M7D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4m7d_K] [4m7d_J] [4m7d_O] [4m7d_F] [4m7d] [4m7d_A] [4m7d_G] [4m7d_H] [4m7d_E] [4m7d_L] [4m7d_B] [4m7d_M] [4m7d_P] [4m7d_D] [4m7d_I] [4m7d_C] [4m7d_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4M7D: [Sm ] by SMART
  • Other resources with information on 4M7D
  • Community annotation for 4M7D at PDBWiki (http://pdbwiki.org)

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