OCA Atlas for 4MD9

4MD9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, D, B, N, I, O, J, C	protein kinase regulator act...
M, G, E, K, F, H, L, P

Primary reference

Active Form of the Protein Kinase CK2 alphabeta Holoenzyme Is a Strong Complex with Symmetric Architecture., Lolli G, Ranchio A, Battistutta R, ACS Chem Biol. 2013 Nov 11. PMID:24175891

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1456 Kb) [Save to disk]

Biological Unit Coordinates (4md9.pdb1.gz) 367 Kb

Biological Unit Coordinates (4md9.pdb2.gz) 366 Kb

Biological Unit Coordinates (4md9.pdb3.gz) 366 Kb

Biological Unit Coordinates (4md9.pdb4.gz) 364 Kb

LPC: Ligand-Protein Contacts for 4MD9

CSU: Contacts of Structural Units for 4MD9

Structure Factors (3573 Kb)

Retrieve 4MD9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4MD9 from S2C, [Save to disk]

Re-refined 4md9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4MD9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4md9] [4md9_A] [4md9_B] [4md9_C] [4md9_D] [4md9_E] [4md9_F] [4md9_G] [4md9_H] [4md9_I] [4md9_J] [4md9_K] [4md9_L] [4md9_M] [4md9_N] [4md9_O] [4md9_P]

SWISS-PROT database:

Domains found in 4MD9: [CK_II_beta] [S_TKc ] by SMART

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