4MDF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CIT, GTP, MG enzyme
Gene CTHE
Primary referenceStructures of bacterial polynucleotide kinase in a Michaelis complex with GTP*Mg2+ and 5'-OH oligonucleotide and a product complex with GDP*Mg2+ and 5'-PO4 oligonucleotide reveal a mechanism of general acid-base catalysis and the determinants of phosphoacceptor recognition., Das U, Wang LK, Smith P, Jacewicz A, Shuman S, Nucleic Acids Res. 2013 Oct 22. PMID:24150947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4mdf.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 4MDF
  • CSU: Contacts of Structural Units for 4MDF
  • Structure Factors (842 Kb)
  • Retrieve 4MDF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MDF from S2C, [Save to disk]
  • Re-refined 4mdf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4MDF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mdf] [4mdf_A] [4mdf_B] [4mdf_C] [4mdf_D]
  • SWISS-PROT database:

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