4MDK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	U94	enzyme
Primary reference	E2 enzyme inhibition by stabilization of a low-affinity interface with ubiquitin., Huang H, Ceccarelli DF, Orlicky S, St-Cyr DJ, Ziemba A, Garg P, Plamondon S, Auer M, Sidhu S, Marinier A, Kleiger G, Tyers M, Sicheri F, Nat Chem Biol. 2013 Dec 15. doi: 10.1038/nchembio.1412. PMID:24316736

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk] Biological Unit Coordinates (4mdk.pdb1.gz) 83 Kb Biological Unit Coordinates (4mdk.pdb2.gz) 80 Kb Biological Unit Coordinates (4mdk.pdb3.gz) 83 Kb Biological Unit Coordinates (4mdk.pdb4.gz) 78 Kb LPC: Ligand-Protein Contacts for 4MDK CSU: Contacts of Structural Units for 4MDK Structure Factors (450 Kb) Retrieve 4MDK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4MDK from S2C, [Save to disk] Re-refined 4mdk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4MDK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4mdk] [4mdk_A] [4mdk_B] [4mdk_C] [4mdk_D] [4mdk_E] [4mdk_F] [4mdk_G] [4mdk_H] SWISS-PROT database: Domains found in 4MDK: [UBCc] [UBQ ] by SMART

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