4MF1	ITK kinase domain in complex with benzothiazole inhibitor 12b (1S,2S)-2-{4-[(DIMETHYLAMINO)METHYL]PHENYL}-N-[6-(1H-PYRAZOL-4-YL)-1,3-BENZOTHIAZOL-2-YL]CYCLOPROPANECARBOXAMIDE	date	2013-08-27
authors	Eigenbrot, C., Shia, S.
compound		source
symmetry		R_factor R_Free 0.2286
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.11
ligand	29Y	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-based design and synthesis of potent benzothiazole inhibitors of interleukin-2 inducible T cell kinase (ITK)., Mackinnon CH, Lau K, Burch JD, Chen Y, Dines J, Ding X, Eigenbrot C, Heifetz A, Jaochico A, Johnson A, Kraemer J, Kruger S, Krulle TM, Liimatta M, Ly J, Maghames R, Montalbetti CA, Ortwine DF, Perez-Fuertes Y, Shia S, Stein DB, Trani G, Vaidya DG, Wang X, Bromidge SM, Wu LC, Pei Z, Bioorg Med Chem Lett. 2013 Dec 1;23(23):6331-5. doi: 10.1016/j.bmcl.2013.09.069. , Epub 2013 Oct 1. PMID:24138940

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (4mf1.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 4MF1 CSU: Contacts of Structural Units for 4MF1 Structure Factors (423 Kb) Retrieve 4MF1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4MF1 from S2C, [Save to disk] Re-refined 4mf1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4MF1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4MF1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4MF1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4mf1] [4mf1_B] [4mf1_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4MF1: [TyrKc ] by SMART

Other resources with information on 4MF1

Community annotation for 4MF1 at PDBWiki (http://pdbwiki.org)

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