4MFA Structure of human DNA polymerase beta complexed with nicked DNA containing a mismatched template O6MG and incoming TTP date
authors Koag, M.C., Min, K., Monzingo, A.F., Lee, S.
compound source
symmetry
R_factor
R_Free 0.2834
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.27
ligand 6OG, MG, NA, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (4mfa.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 4MFA
  • CSU: Contacts of Structural Units for 4MFA
  • Structure Factors (151 Kb)
  • Retrieve 4MFA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MFA from S2C, [Save to disk]
  • Re-refined 4mfa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4MFA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4MFA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4MFA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mfa_D] [4mfa_P] [4mfa_T] [4mfa] [4mfa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4MFA: [HhH1] [POLXc ] by SMART
  • Other resources with information on 4MFA
  • Community annotation for 4MFA at PDBWiki (http://pdbwiki.org)

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