4MT5 Protein Binding date Sep 19, 2013
title Crystal Structure Of Mub-Rv
authors S.Etzold, N.Juge, A.M.Hemmings
compound source
Molecule: Mucus Binding Proteinn
Chain: A, B
Fragment: Mub Repeat V (Unp Residues 1612-1794
Engineered: Yes
Organism_scientific: Lactobacillus Reuteri
Organism_taxid: 927703
Strain: Atcc 53608
Gene: Mub
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner(De3)Placi2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petblue-1 Acceptor
symmetry Space Group: C 2 2 21
R_factor 0.211 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.400 271.730 142.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Primary referenceStructural basis for adaptation of lactobacilli to gastrointestinal mucus., Etzold S, Kober OI, Mackenzie DA, Tailford LE, Gunning AP, Walshaw J, Hemmings AM, Juge N, Environ Microbiol. 2014 Mar;16(3):888-903. doi: 10.1111/1462-2920.12377. Epub, 2014 Jan 23. PMID:24373178
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (4mt5.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (4mt5.pdb2.gz) 31 Kb
  • CSU: Contacts of Structural Units for 4MT5
  • Structure Factors (370 Kb)
  • Retrieve 4MT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4MT5 from S2C, [Save to disk]
  • Re-refined 4mt5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4MT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4MT5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4MT5, from MSDmotif at EBI
  • Fold representative 4mt5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4mt5_B] [4mt5] [4mt5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4MT5
  • Community annotation for 4MT5 at PDBWiki (http://pdbwiki.org)

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