4N00 Discovery of 7-THP chromans: BACE1 inhibitors that reduce A-beta in the CNS date
authors Vigers, G.P.A., Smith, D.
compound source
symmetry
R_factor
R_Free 0.23522
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 2EX, NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of 7-tetrahydropyran-2-yl chromans: beta-site amyloid precursor protein cleaving enzyme 1 (BACE1) inhibitors that reduce amyloid beta-protein (Abeta) in the central nervous system., Thomas AA, Hunt KW, Volgraf M, Watts RJ, Liu X, Vigers G, Smith D, Sammond D, Tang TP, Rhodes SP, Metcalf AT, Brown KD, Otten JN, Burkard M, Cox AA, Do MK, Dutcher D, Rana S, DeLisle RK, Regal K, Wright AD, Groneberg R, Scearce-Levie K, Siu M, Purkey HE, Lyssikatos JP, Gunawardana IW, J Med Chem. 2014 Feb 13;57(3):878-902. doi: 10.1021/jm401635n. Epub 2014 Jan 22. PMID:24397738
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (4n00.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 4N00
  • CSU: Contacts of Structural Units for 4N00
  • Structure Factors (658 Kb)
  • Retrieve 4N00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4N00 from S2C, [Save to disk]
  • Re-refined 4n00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4N00 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4N00
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4N00, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4n00_A] [4n00]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4N00
  • Community annotation for 4N00 at PDBWiki (http://pdbwiki.org)

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