4N7E	Crystal structure of the Vps10p domain of human sortilin/NTS3 in complex with AF38469	date	2013-10-15
authors	Andersen, J.L., Strandbygaard, D., Thirup, S.
compound		source
symmetry		R_factor R_Free 0.2416
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.70
ligand	2JQ, BMA, NAG, PGE	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	The identification of AF38469: An orally bioavailable inhibitor of the VPS10P family sorting receptor Sortilin., Schroder TJ, Christensen S, Lindberg S, Langgard M, David L, Maltas PJ, Eskildsen J, Jacobsen J, Tagmose L, Simonsen KB, Biilmann Ronn LC, de Jong IE, Malik IJ, Karlsson JJ, Bundgaard C, Egebjerg J, Stavenhagen JB, Strandbygard D, Thirup S, Andersen JL, Uppalanchi S, Pervaram S, Kasturi SP, Eradi P, Sakumudi DR, Watson SP, Bioorg Med Chem Lett. 2014 Jan 1;24(1):177-80. doi: 10.1016/j.bmcl.2013.11.046., Epub 2013 Nov 27. PMID:24355129

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (227 Kb) [Save to disk] Biological Unit Coordinates (4n7e.pdb1.gz) 221 Kb LPC: Ligand-Protein Contacts for 4N7E CSU: Contacts of Structural Units for 4N7E Structure Factors (544 Kb) Retrieve 4N7E in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4N7E from S2C, [Save to disk] Re-refined 4n7e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4N7E in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4N7E

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4N7E, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4n7e_A] [4n7e] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4N7E: [VPS10 ] by SMART

Other resources with information on 4N7E

Community annotation for 4N7E at PDBWiki (http://pdbwiki.org)

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