4NAK Arabidopsis thaliana IspD in complex with pentabromo-pseudilin date 2013-10-22
authors Kunfermann, A., Witschel, M., Illarionov, B., Martin, R., Rottmann, M., Hoffken, H.W., Seet, M., Eisenreich, W., Knolker, H.J., Fischer, M., Bacher, A., Groll, M., Diederich, F.
compound source
symmetry
R_factor
R_Free 0.21821
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand CD, DTT, K, PBQ enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePseudilins: Halogenated, Allosteric Inhibitors of the Non-Mevalonate Pathway Enzyme IspD., Kunfermann A, Witschel M, Illarionov B, Martin R, Rottmann M, Hoffken HW, Seet M, Eisenreich W, Knolker HJ, Fischer M, Bacher A, Groll M, Diederich F, Angew Chem Int Ed Engl. 2014 Jan 20. doi: 10.1002/anie.201309557. PMID:24446431
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4nak.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 4NAK
  • CSU: Contacts of Structural Units for 4NAK
  • Structure Factors (315 Kb)
  • Retrieve 4NAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NAK from S2C, [Save to disk]
  • Re-refined 4nak structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NAK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NAK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nak_A] [4nak]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NAK
  • Community annotation for 4NAK at PDBWiki (http://pdbwiki.org)

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