4NCY In situ trypsin crystallized on a MiTeGen micromesh with imidazole ligand date
authors Yin, X., Scalia, A., Leroy, L., Cuttitta, C.M., Polizzo, G.M., Ericson, D.L., Roessler, C.G., Campos, O., Agarwal, R., Allaire, M., Orville, A.M., Jackimowicz, R., Ma, M.Y., Sweet, R.M., Soares, A.S.
compound source
symmetry
R_factor
R_Free 0.13849
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.42
ligand BEN, CA, EDO, IMD, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHitting the target: fragment screening with acoustic in situ co-crystallization of proteins plus fragment libraries on pin-mounted data-collection micromeshes., Yin X, Scalia A, Leroy L, Cuttitta CM, Polizzo GM, Ericson DL, Roessler CG, Campos O, Ma MY, Agarwal R, Jackimowicz R, Allaire M, Orville AM, Sweet RM, Soares AS, Acta Crystallogr D Biol Crystallogr. 2014 May;70(Pt 5):1177-89. doi:, 10.1107/S1399004713034603. Epub 2014 Apr 30. PMID:24816088
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4ncy.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4NCY
  • CSU: Contacts of Structural Units for 4NCY
  • Structure Factors (1158 Kb)
  • Retrieve 4NCY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NCY from S2C, [Save to disk]
  • Re-refined 4ncy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NCY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NCY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NCY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ncy] [4ncy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NCY: [Tryp_SPc ] by SMART
    • Other resources with information on 4NCY
  • Community annotation for 4NCY at PDBWiki (http://pdbwiki.org)

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