4NIV Crystal structure of trypsiligase (K60E/N143H/Y151H/D189K trypsin) trigonal form date
authors Schoepfel, M., Parthier, C., Stubbs, M.T.
compound source
symmetry
R_factor
R_Free 0.1729
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.00
ligand CA, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceN-Terminal Protein Modification by Substrate-Activated Reverse Proteolysis., Liebscher S, Schopfel M, Aumuller T, Sharkhuukhen A, Pech A, Hoss E, Parthier C, Jahreis G, Stubbs MT, Bordusa F, Angew Chem Int Ed Engl. 2014 Feb 12. doi: 10.1002/anie.201307736. PMID:24520050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4niv.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4NIV
  • CSU: Contacts of Structural Units for 4NIV
  • Structure Factors (628 Kb)
  • Retrieve 4NIV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NIV from S2C, [Save to disk]
  • Re-refined 4niv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NIV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NIV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NIV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4niv] [4niv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4NIV: [Tryp_SPc ] by SMART
    • Other resources with information on 4NIV
  • Community annotation for 4NIV at PDBWiki (http://pdbwiki.org)

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