4NJA Crystal structure of Fab 6C8 in complex with MPTS date
authors Stanfield, R.L., Romesberg, F.E., Zimmermann, J., Wilson, I.A.
compound source
symmetry
R_factor
R_Free 0.26486
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 2M9, ACT, PO4, ZN enzyme
Primary referenceAdaptive Mutations Alter Antibody Structure and Dynamics during Affinity Maturation., Adhikary R, Yu W, Oda M, Walker RC, Chen T, Stanfield RL, Wilson IA, Zimmermann J, Romesberg FE, Biochemistry. 2015 Mar 24;54(11):2085-93. doi: 10.1021/bi501417q. Epub 2015 Mar, 10. PMID:25756188
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (149 Kb) [Save to disk]
  • Biological Unit Coordinates (4nja.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 4NJA
  • CSU: Contacts of Structural Units for 4NJA
  • Structure Factors (230 Kb)
  • Retrieve 4NJA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NJA from S2C, [Save to disk]
  • Re-refined 4nja structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NJA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NJA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NJA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nja_L] [4nja] [4nja_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NJA: [IG_like] [IGv ] by SMART
    • Other resources with information on 4NJA
  • Community annotation for 4NJA at PDBWiki (http://pdbwiki.org)

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