4NL4 PriA Helicase Bound to ADP date 2013-11-13
authors Bhattacharyya, B., George, N.P., Keck, J.L.
compound source
symmetry
R_factor
R_Free 0.25401
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand ADP, ZN enzyme
Gene KPN78578 ; KPN
Gene
Ontology
ChainFunctionProcessComponent
H


Primary referenceStructural mechanisms of PriA-mediated DNA replication restart., Bhattacharyya B, George NP, Thurmes TM, Zhou R, Jani N, Wessel SR, Sandler SJ, Ha T, Keck JL, Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1373-8. doi:, 10.1073/pnas.1318001111. Epub 2013 Dec 30. PMID:24379377
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (4nl4.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 4NL4
  • CSU: Contacts of Structural Units for 4NL4
  • Structure Factors (400 Kb)
  • Retrieve 4NL4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NL4 from S2C, [Save to disk]
  • Re-refined 4nl4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NL4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NL4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NL4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nl4_H] [4nl4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NL4: [DEXDc] [HELICc ] by SMART
    • Other resources with information on 4NL4
  • Community annotation for 4NL4 at PDBWiki (http://pdbwiki.org)

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