4NM4 Crystal structure of broadly neutralizing antibody CR8043 date
authors Lee, P.S., Wilson, I.A.
compound source
symmetry
R_factor
R_Free 0.2317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.65
ligand PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
M, L


Primary referenceA common solution to group 2 influenza virus neutralization., Friesen RH, Lee PS, Stoop EJ, Hoffman RM, Ekiert DC, Bhabha G, Yu W, Juraszek J, Koudstaal W, Jongeneelen M, Korse HJ, Ophorst C, Brinkman-van der Linden EC, Throsby M, Kwakkenbos MJ, Bakker AQ, Beaumont T, Spits H, Kwaks T, Vogels R, Ward AB, Goudsmit J, Wilson IA, Proc Natl Acad Sci U S A. 2013 Dec 11. PMID:24335589
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk]
  • Biological Unit Coordinates (4nm4.pdb1.gz) 139 Kb
  • Biological Unit Coordinates (4nm4.pdb2.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 4NM4
  • CSU: Contacts of Structural Units for 4NM4
  • Structure Factors (289 Kb)
  • Retrieve 4NM4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NM4 from S2C, [Save to disk]
  • Re-refined 4nm4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NM4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NM4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NM4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nm4_I] [4nm4] [4nm4_H] [4nm4_L] [4nm4_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4NM4: [IG_like] [IGv ] by SMART
    • Other resources with information on 4NM4
  • Community annotation for 4NM4 at PDBWiki (http://pdbwiki.org)

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