4NMF Crystal structure of proline utilization A (PutA) from Geobacter sulfurreducens PCA inactivated by N-propargylglycine and complexed with menadione bisulfite date 2013-11-14
authors Singh, H., Tanner, J.J.
compound source
symmetry
R_factor
R_Free 0.2026
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand 2L3, 2LB, EDO, P5F enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of the PutA peripheral membrane flavoenzyme reveal a dynamic substrate-channeling tunnel and the quinone-binding site., Singh H, Arentson BW, Becker DF, Tanner JJ, Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3389-94. doi:, 10.1073/pnas.1321621111. Epub 2014 Feb 18. PMID:24550478
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (629 Kb) [Save to disk]
  • Biological Unit Coordinates (4nmf.pdb1.gz) 622 Kb
  • LPC: Ligand-Protein Contacts for 4NMF
  • CSU: Contacts of Structural Units for 4NMF
  • Structure Factors (1567 Kb)
  • Retrieve 4NMF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NMF from S2C, [Save to disk]
  • Re-refined 4nmf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NMF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NMF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NMF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nmf_B] [4nmf_A] [4nmf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NMF
  • Community annotation for 4NMF at PDBWiki (http://pdbwiki.org)

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