4NPY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, PCA enzyme
Primary referenceThe Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies., Sok D, Laserson U, Laserson J, Liu Y, Vigneault F, Julien JP, Briney B, Ramos A, Saye KF, Le K, Mahan A, Wang S, Kardar M, Yaari G, Walker LM, Simen BB, St John EP, Chan-Hui PY, Swiderek K, Kleinstein SH, Alter G, Seaman MS, Chakraborty AK, Koller D, Wilson IA, Church GM, Burton DR, Poignard P, PLoS Pathog. 2013 Nov;9(11):e1003754. doi: 10.1371/journal.ppat.1003754. Epub, 2013 Nov 21. PMID:24278016
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk]
  • Biological Unit Coordinates (4npy.pdb1.gz) 143 Kb
  • Biological Unit Coordinates (4npy.pdb2.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 4NPY
  • CSU: Contacts of Structural Units for 4NPY
  • Structure Factors (723 Kb)
  • Retrieve 4NPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NPY from S2C, [Save to disk]
  • Re-refined 4npy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4npy] [4npy_A] [4npy_B] [4npy_H] [4npy_L]
  • SWISS-PROT database:
  • Domains found in 4NPY: [IG_like] [IGv ] by SMART

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