4NRK Structure of hemagglutinin with F95Y mutation of influenza virus B/Lee/40 complex with LSTc date
authors Ni, F., Mbawuike, I.N., Kondrashkina, E., Wang, Q.
compound source
symmetry
R_factor
R_Free 0.2448
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.63
ligand BMA, GAL, NAG, SIA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


F, D, B


Primary referenceThe roles of hemagglutinin Phe-95 in receptor binding and pathogenicity of influenza B virus., Ni F, Nnadi Mbawuike I, Kondrashkina E, Wang Q, Virology. 2014 Feb;450-451:71-83. doi: 10.1016/j.virol.2013.11.038. Epub 2013 Dec, 22. PMID:24503069
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (4nrk.pdb1.gz) 250 Kb
  • LPC: Ligand-Protein Contacts for 4NRK
  • CSU: Contacts of Structural Units for 4NRK
  • Structure Factors (730 Kb)
  • Retrieve 4NRK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4NRK from S2C, [Save to disk]
  • Re-refined 4nrk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4NRK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4NRK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4NRK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4nrk_E] [4nrk_C] [4nrk_D] [4nrk_A] [4nrk_F] [4nrk_B] [4nrk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4NRK
  • Community annotation for 4NRK at PDBWiki (http://pdbwiki.org)

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