OCA Atlas for 4O02

4O02

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, MAN, MN, NAG, NO3

enzyme

Gene
Ontology

Chain	Function	Process	Component
A
B		smooth muscle cell migration...

Primary reference

Atomic basis for the species-specific inhibition of alphaV integrins by monoclonal antibody 17E6 is revealed by the crystal structure of alphaVbeta3 ectodomain-17E6 Fab complex., Mahalingam B, Van Agthoven JF, Xiong JP, Alonso JL, Adair BD, Rui X, Anand S, Mehrbod M, Mofrad MR, Burger C, Goodman SL, Arnaout MA, J Biol Chem. 2014 May 16;289(20):13801-9. doi: 10.1074/jbc.M113.546929. Epub 2014, Apr 1. PMID:24692540

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (590 Kb) [Save to disk]

Biological Unit Coordinates (4o02.pdb1.gz) 573 Kb

LPC: Ligand-Protein Contacts for 4O02

CSU: Contacts of Structural Units for 4O02

Structure Factors (294 Kb)

Retrieve 4O02 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4O02 from S2C, [Save to disk]

Re-refined 4o02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4O02 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4o02] [4o02_A] [4o02_B] [4o02_H] [4o02_L]

SWISS-PROT database:

Domains found in 4O02: [IG_like] [IGv] [INB] [Int_alpha] [Integrin_B_tail] [PSI] [VWA ] by SMART

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