4O2E A peptide complexed with HLA-B*3901 date
authors Sun, M., Liu, J., Qi, J., Tefsen, B., Shi, Y., Yan, J., Gao, G.F.
compound source
symmetry
R_factor
R_Free 0.2080
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.98
Gene
Ontology
ChainFunctionProcessComponent
E, B
  • cellular response to iron io...

    • Primary referenceNalpha-terminal acetylation for T cell recognition: molecular basis of MHC class I-restricted nalpha-acetylpeptide presentation., Sun M, Liu J, Qi J, Tefsen B, Shi Y, Yan J, Gao GF, J Immunol. 2014 Jun 15;192(12):5509-19. doi: 10.4049/jimmunol.1400199. Epub 2014 , May 14. PMID:24829406
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk]
  • Biological Unit Coordinates (4o2e.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (4o2e.pdb2.gz) 146 Kb
  • CSU: Contacts of Structural Units for 4O2E
  • Structure Factors (1128 Kb)
  • Retrieve 4O2E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O2E from S2C, [Save to disk]
  • Re-refined 4o2e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4O2E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4O2E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O2E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o2e_C] [4o2e_E] [4o2e_A] [4o2e_F] [4o2e] [4o2e_B] [4o2e_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4O2E: [IGc1 ] by SMART
    • Other resources with information on 4O2E
  • Community annotation for 4O2E at PDBWiki (http://pdbwiki.org)

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