4O3T Zymogen HGF-beta/MET with Zymogen Activator Peptide ZAP.14 date
authors Eigenbrot, C., Landgraf, K.E., Steffek, M.
compound source
symmetry
R_factor
R_Free 0.2758
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.99
ligand 1PE, FUC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceAn allosteric switch for pro-HGF/Met signaling using zymogen activator peptides., Landgraf KE, Steffek M, Quan C, Tom J, Yu C, Santell L, Maun HR, Eigenbrot C, Lazarus RA, Nat Chem Biol. 2014 May 25. doi: 10.1038/nchembio.1533. PMID:24859116
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]
  • Biological Unit Coordinates (4o3t.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 4O3T
  • CSU: Contacts of Structural Units for 4O3T
  • Structure Factors (268 Kb)
  • Retrieve 4O3T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O3T from S2C, [Save to disk]
  • Re-refined 4o3t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4O3T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4O3T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O3T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o3t] [4o3t_B] [4o3t_P] [4o3t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4O3T: [PSI] [Sema] [Tryp_SPc ] by SMART
    • Other resources with information on 4O3T
  • Community annotation for 4O3T at PDBWiki (http://pdbwiki.org)

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