4O9U Mechanism of transhydrogenase coupling proton translocation and hydride transfer date
authors Leung, J.H., Yamaguchi, M., Moeller, A., Schurig-Briccio, L.A., Gennis, R.B., Potter, C.S., Carragher, B., Stout, C.D.
compound source
symmetry
R_factor
R_Free 0.28372
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 6.93
ligand NAD, NAP enzyme
Gene TT ; TT ; TT
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


F, E


Primary referenceStructural biology. Division of labor in transhydrogenase by alternating proton translocation and hydride transfer., Leung JH, Schurig-Briccio LA, Yamaguchi M, Moeller A, Speir JA, Gennis RB, Stout CD, Science. 2015 Jan 9;347(6218):178-81. doi: 10.1126/science.1260451. PMID:25574024
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (4o9u.pdb1.gz) 280 Kb
  • LPC: Ligand-Protein Contacts for 4O9U
  • CSU: Contacts of Structural Units for 4O9U
  • Structure Factors (99 Kb)
  • Retrieve 4O9U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4O9U from S2C, [Save to disk]
  • Re-refined 4o9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4O9U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4O9U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4O9U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4o9u_F] [4o9u_A] [4o9u_B] [4o9u_D] [4o9u_E] [4o9u_C] [4o9u]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4O9U: [AlaDh_PNT_C] [AlaDh_PNT_N ] by SMART
  • Other resources with information on 4O9U
  • Community annotation for 4O9U at PDBWiki (http://pdbwiki.org)

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