4ODT date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GP1, PG0, Z9M enzyme
Primary referenceStructural Basis for Antibody Recognition of Lipid A: Insights to Polyspecificity Toward Single Stranded DNA., Haji-Ghassemi O, Muller-Loennies S, Rodriguez T, Brade L, Kosma P, Brade H, Evans SV, J Biol Chem. 2015 Jun 17. pii: jbc.M115.657874. PMID:26085093
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (4odt.pdb1.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 4ODT
  • CSU: Contacts of Structural Units for 4ODT
  • Structure Factors (542 Kb)
  • Retrieve 4ODT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ODT from S2C, [Save to disk]
  • Re-refined 4odt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ODT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4odt] [4odt_H] [4odt_L]
  • SWISS-PROT database:
  • Domains found in 4ODT: [IG_like] [IGv ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science