4ODX 4E10 germline encoded precursor no.7 in complex with epitope scaffold T117 date
authors Finton, K.A.K.
compound source
symmetry
R_factor
R_Free 0.30433
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
Gene
Ontology
ChainFunctionProcessComponent
L, B


Primary referenceOntogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10., Finton KA, Friend D, Jaffe J, Gewe M, Holmes MA, Larman HB, Stuart A, Larimore K, Greenberg PD, Elledge SJ, Stamatatos L, Strong RK, PLoS Pathog. 2014 Sep 25;10(9):e1004403. doi: 10.1371/journal.ppat.1004403., eCollection 2014 Sep. PMID:25254371
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (4odx.pdb1.gz) 122 Kb
  • Biological Unit Coordinates (4odx.pdb2.gz) 123 Kb
  • CSU: Contacts of Structural Units for 4ODX
  • Structure Factors (287 Kb)
  • Retrieve 4ODX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ODX from S2C, [Save to disk]
  • Re-refined 4odx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ODX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ODX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ODX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4odx_H] [4odx_X] [4odx_Y] [4odx] [4odx_A] [4odx_L] [4odx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ODX: [IGv ] by SMART
    • Other resources with information on 4ODX
  • Community annotation for 4ODX at PDBWiki (http://pdbwiki.org)

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