4OEW Crystal structure of the PDE5A1 catalytic domain in complex with novel inhibitors date
authors Chen, T.T., Ren, J., Xu, Y.C.
compound source
symmetry
R_factor
R_Free 0.2586
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.44
ligand 5IO, MG, ZN enzyme
note 4OEW supersedes 3TSF
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThermodynamic and structural characterization of halogen bonding in protein-ligand interactions: a case study of PDE5 and its inhibitors., Ren J, He Y, Chen W, Chen T, Wang G, Wang Z, Xu Z, Luo X, Zhu W, Jiang H, Shen J, Xu Y, J Med Chem. 2014 Apr 24;57(8):3588-93. doi: 10.1021/jm5002315. Epub 2014 Apr 15. PMID:24702184
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (4oew.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 4OEW
  • CSU: Contacts of Structural Units for 4OEW
  • Structure Factors (142 Kb)
  • Retrieve 4OEW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OEW from S2C, [Save to disk]
  • Re-refined 4oew structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OEW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OEW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OEW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oew_A] [4oew]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OEW: [HDc ] by SMART
    • Other resources with information on 4OEW
  • Community annotation for 4OEW at PDBWiki (http://pdbwiki.org)

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