4OGH Hormone Receptor date Jan 16, 2014
title Crystal Structure Of T877a-Ar-Lbd
authors J.S.Liu, C.L.Hsu, W.G.Wu
compound source
Molecule: Androgen Receptor
Chain: A
Fragment: Ligand Binding Domain
Synonym: Dihydrotestosterone Receptor, Nuclear Receptor Sub Group C Member 4;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ar, Dhtr, Nr3c4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.007 65.759 70.736 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.98 Å
ligand HFT, SO4 enzyme
Primary referenceIdentification of a new androgen receptor (AR) co-regulator BUD31 and related peptides to suppress wild-type and mutated AR-mediated prostate cancer growth via peptide screening and X-ray structure analysis., Hsu CL, Liu JS, Wu PL, Guan HH, Chen YL, Lin AC, Ting HJ, Pang ST, Yeh SD, Ma WL, Chen CJ, Wu WG, Chang C, Mol Oncol. 2014 Jun 24. pii: S1574-7891(14)00133-1. doi:, 10.1016/j.molonc.2014.06.009. PMID:25091737
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (4ogh.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4OGH
  • CSU: Contacts of Structural Units for 4OGH
  • Structure Factors (93 Kb)
  • Retrieve 4OGH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OGH from S2C, [Save to disk]
  • Re-refined 4ogh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OGH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OGH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4OGH, from MSDmotif at EBI
  • Fold representative 4ogh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ogh_A] [4ogh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OGH: [HOLI ] by SMART
  • Other resources with information on 4OGH
  • Community annotation for 4OGH at PDBWiki (http://pdbwiki.org)

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