4OGK	X-ray structure of the uridine phosphorylase from Salmonella typhimurium in complex with thymidine at 2.40 A resolution	date
authors	Sotnichenko, S.E., Lashkov, A.A., Gabdoulkhakov, A.G., Mikhailov, A.M.
compound		source
symmetry		R_factor R_Free 0.2363
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.40
ligand	EDO, IPA, K, PEG, PG4, THM	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk] Biological Unit Coordinates (4ogk.pdb1.gz) 218 Kb LPC: Ligand-Protein Contacts for 4OGK CSU: Contacts of Structural Units for 4OGK Structure Factors (397 Kb) Retrieve 4OGK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4OGK from S2C, [Save to disk] Re-refined 4ogk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4OGK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4OGK

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4OGK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ogk_D] [4ogk_B] [4ogk_E] [4ogk_C] [4ogk] [4ogk_F] [4ogk_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4OGK

Community annotation for 4OGK at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---