4OHW	Rna Binding Protein	date	Jan 18, 2014
title	C. Elegans Clp1 Bound To Atp, And Mn2+(Atp-Bound State)
authors	A.Dikfidan, B.Loll, C.Zeymer, T.Clausen, A.Meinhart
compound		source
Molecule: Protein Clpf-1 Chain: A Engineered: Yes		Organism_scientific: Caenorhabditis Elegans Organism_common: Nematode Organism_taxid: 6239 Gene: Clpf-1, F59a2.4 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28b
symmetry	Space Group: P 31	R_factor 0.202 R_Free 0.241
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.340 99.340 40.800 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	2PE, ATP, MN	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1., Dikfidan A, Loll B, Zeymer C, Magler I, Clausen T, Meinhart A, Mol Cell. 2014 Jun 19;54(6):975-86. doi: 10.1016/j.molcel.2014.04.005. Epub 2014 , May 8. PMID:24813946

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (4ohw.pdb1.gz) 135 Kb LPC: Ligand-Protein Contacts for 4OHW CSU: Contacts of Structural Units for 4OHW Structure Factors (376 Kb) Retrieve 4OHW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4OHW from S2C, [Save to disk] Re-refined 4ohw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4OHW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4OHW

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4OHW, from MSDmotif at EBI Fold representative 4ohw from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ohw_A] [4ohw] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4OHW

Community annotation for 4OHW at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014 Bioinformatics Unit Weizmann Institute of Science

---