4OIK (Quasi-)Racemic X-ray crystal structure of glycosylated chemokine Ser-CCL1. date
authors Okamoto, R., Mandal, K., Sawaya, M.R., Kajihara, Y., Yeates, T.O., Kent, S.B.H.
compound source
symmetry
R_factor
R_Free 0.2758
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand CIT, DAL, DAR, DAS, DCY, DGL, DGN, DHI, DIL, DLE, DLY, DPN, DPR, DSG, DSN, DTH, DTR, DTY, DVA, MED, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary reference(Quasi-)Racemic X-ray Structures of Glycosylated and Non-Glycosylated Forms of the Chemokine Ser-CCL1 Prepared by Total Chemical Synthesis., Okamoto R, Mandal K, Sawaya MR, Kajihara Y, Yeates TO, Kent SB, Angew Chem Int Ed Engl. 2014 Apr 1. doi: 10.1002/anie.201400679. PMID:24692304
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (4oik.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (4oik.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4OIK
  • CSU: Contacts of Structural Units for 4OIK
  • Structure Factors (424 Kb)
  • Retrieve 4OIK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OIK from S2C, [Save to disk]
  • Re-refined 4oik structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OIK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OIK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OIK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oik_B] [4oik] [4oik_A] [4oik_C] [4oik_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OIK: [SCY ] by SMART
    • Other resources with information on 4OIK
  • Community annotation for 4OIK at PDBWiki (http://pdbwiki.org)

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