4OKW Hormone Receptor Peptide date Jan 23, 2014
title Crystal Structure Of W741l-Ar-Lbd Bound With Co-Regulator Pe
authors J.S.Liu, C.L.Hsu, W.G.Wu
compound source
Molecule: Androgen Receptor
Chain: A
Fragment: Ligand Binding Doamin
Synonym: Dihydrotestosterone Receptor, Nuclear Receptor Sub Group C Member 4;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ar, Dhtr, Nr3c4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28

Molecule: Co-Regulator Peptide
Chain: B
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.877 66.411 70.293 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 198 enzyme
Primary referenceIdentification of a new androgen receptor (AR) co-regulator BUD31 and related peptides to suppress wild-type and mutated AR-mediated prostate cancer growth via peptide screening and X-ray structure analysis., Hsu CL, Liu JS, Wu PL, Guan HH, Chen YL, Lin AC, Ting HJ, Pang ST, Yeh SD, Ma WL, Chen CJ, Wu WG, Chang C, Mol Oncol. 2014 Jun 24. pii: S1574-7891(14)00133-1. doi:, 10.1016/j.molonc.2014.06.009. PMID:25091737
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (4okw.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 4OKW
  • CSU: Contacts of Structural Units for 4OKW
  • Structure Factors (322 Kb)
  • Retrieve 4OKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OKW from S2C, [Save to disk]
  • Re-refined 4okw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OKW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4OKW, from MSDmotif at EBI
  • Fold representative 4okw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4okw_A] [4okw] [4okw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OKW: [HOLI ] by SMART
  • Other resources with information on 4OKW
  • Community annotation for 4OKW at PDBWiki (http://pdbwiki.org)

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