4OOR Ancestral Steroid Receptor 2 DNA binding domain in complex with a steroid response element date
authors Ortlund, E.O., Murphy, M.N.
compound source
symmetry
R_factor
R_Free 0.2326
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B


Primary referenceEvolution of DNA specificity in a transcription factor family produced a new gene regulatory module., McKeown AN, Bridgham JT, Anderson DW, Murphy MN, Ortlund EA, Thornton JW, Cell. 2014 Sep 25;159(1):58-68. doi: 10.1016/j.cell.2014.09.003. PMID:25259920
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (4oor.pdb1.gz) 78 Kb
  • Biological Unit Coordinates (4oor.pdb2.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 4OOR
  • CSU: Contacts of Structural Units for 4OOR
  • Structure Factors (713 Kb)
  • Retrieve 4OOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OOR from S2C, [Save to disk]
  • Re-refined 4oor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OOR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4OOR, from MSDmotif at EBI
  • Fold representative 4oor from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oor] [4oor_F] [4oor_L] [4oor_K] [4oor_J] [4oor_I] [4oor_A] [4oor_E] [4oor_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4OOR: [ZnF_C4 ] by SMART
  • Other resources with information on 4OOR
  • Community annotation for 4OOR at PDBWiki (http://pdbwiki.org)

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