4OP0 Crystal structure of biotin protein ligase (RV3279C) of Mycobacterium tuberculosis, complexed with biotinyl-5'-AMP date
authors Ma, Q., Wilmanns, M., Akhter, Y.
compound source
symmetry
R_factor
R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand BT5, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceActive site conformational changes upon reaction intermediate biotinyl-5'-AMP binding in biotin protein ligase from Mycobacterium tuberculosis., Ma Q, Akhter Y, Wilmanns M, Ehebauer MT, Protein Sci. 2014 Apr 9. doi: 10.1002/pro.2475. PMID:24723382
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (4op0.pdb1.gz) 83 Kb
  • Biological Unit Coordinates (4op0.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 4OP0
  • CSU: Contacts of Structural Units for 4OP0
  • Structure Factors (753 Kb)
  • Retrieve 4OP0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OP0 from S2C, [Save to disk]
  • Re-refined 4op0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4OP0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4OP0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OP0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4op0_A] [4op0] [4op0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4OP0
  • Community annotation for 4OP0 at PDBWiki (http://pdbwiki.org)

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