OCA Atlas for 4OQ9

4OQ9

Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints

date

authors

Larson, S.B., Day, J.S., McPherson, A.

compound

source

symmetry

R_factor

R_Free

0.24973

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

1.45

ligand

MG, NA, PO4, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L

Primary reference

Satellite tobacco mosaic virus refined to 1.4 A resolution., Larson SB, Day JS, McPherson A, Acta Crystallogr D Biol Crystallogr. 2014 Sep 1;70(Pt 9):2316-30. doi:, 10.1107/S1399004714013789. Epub 2014 Aug 29. PMID:25195746

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1011 Kb) [Save to disk]

Biological Unit Coordinates (4oq9.pdb1.gz) 3977 Kb

LPC: Ligand-Protein Contacts for 4OQ9

CSU: Contacts of Structural Units for 4OQ9

Structure Factors (7909 Kb)

Retrieve 4OQ9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4OQ9 from S2C, [Save to disk]

Re-refined 4oq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4OQ9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4OQ9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 4OQ9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4oq9] [4oq9_2] [4oq9_P] [4oq9_V] [4oq9_o] [4oq9_r] [4oq9_v] [4oq9_Q] [4oq9_G] [4oq9_1] [4oq9_B] [4oq9_X] [4oq9_i] [4oq9_d] [4oq9_w] [4oq9_n] [4oq9_Y] [4oq9_J] [4oq9_7] [4oq9_k] [4oq9_U] [4oq9_l] [4oq9_h] [4oq9_E] [4oq9_a] [4oq9_j] [4oq9_t] [4oq9_F] [4oq9_c] [4oq9_p] [4oq9_z] [4oq9_f] [4oq9_6] [4oq9_R] [4oq9_s] [4oq9_H] [4oq9_g] [4oq9_y] [4oq9_x] [4oq9_8] [4oq9_I] [4oq9_T] [4oq9_A] [4oq9_Z] [4oq9_e] [4oq9_4] [4oq9_m] [4oq9_q] [4oq9_N] [4oq9_S] [4oq9_M] [4oq9_D] [4oq9_3] [4oq9_L] [4oq9_b] [4oq9_C] [4oq9_W] [4oq9_O] [4oq9_u] [4oq9_5] [4oq9_K]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 4OQ9

Community annotation for 4OQ9 at PDBWiki (http://pdbwiki.org)

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