OCA Atlas for 4OX9

4OX9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, SFG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
V
Y	tRNA (guanine-N7-)-methyltra...

Primary reference

Molecular recognition and modification of the 30S ribosome by the aminoglycoside-resistance methyltransferase NpmA., Dunkle JA, Vinal K, Desai PM, Zelinskaya N, Savic M, West DM, Conn GL, Dunham CM, Proc Natl Acad Sci U S A. 2014 Apr 9. PMID:24717845

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (943 Kb) [Save to disk]

Biological Unit Coordinates (4ox9.pdb1.gz) 932 Kb

LPC: Ligand-Protein Contacts for 4OX9

CSU: Contacts of Structural Units for 4OX9

Structure Factors (2781 Kb)

Retrieve 4OX9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4OX9 from S2C, [Save to disk]

Re-refined 4ox9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4OX9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ox9] [4ox9_A] [4ox9_B] [4ox9_C] [4ox9_D] [4ox9_E] [4ox9_F] [4ox9_G] [4ox9_H] [4ox9_I] [4ox9_J] [4ox9_K] [4ox9_L] [4ox9_M] [4ox9_N] [4ox9_O] [4ox9_P] [4ox9_Q] [4ox9_R] [4ox9_S] [4ox9_T] [4ox9_V] [4ox9_Y]

SWISS-PROT database:

Domains found in 4OX9: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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