4OY9	Crystal structure of human P-Cadherin EC1-EC2 in closed conformation	date
authors	Vedove, A.Dalle., Lucarelli, A.P., Nardone, V., Matino, A., Parisini, E.
compound		source
symmetry		R_factor R_Free 0.20239
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.62
ligand	CA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	The X-ray structure of human P-cadherin EC1-EC2 in a closed conformation provides insight into the type I cadherin dimerization pathway., Dalle Vedove A, Lucarelli AP, Nardone V, Matino A, Parisini E, Acta Crystallogr F Struct Biol Commun. 2015 Apr;71(Pt 4):371-80. doi:, 10.1107/S2053230X15003878. Epub 2015 Mar 20. PMID:25849494

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (4oy9.pdb1.gz) 41 Kb LPC: Ligand-Protein Contacts for 4OY9 CSU: Contacts of Structural Units for 4OY9 Structure Factors (723 Kb) Retrieve 4OY9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4OY9 from S2C, [Save to disk] Re-refined 4oy9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4OY9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4OY9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4OY9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4oy9_A] [4oy9] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4OY9: [CA ] by SMART

Other resources with information on 4OY9

Community annotation for 4OY9 at PDBWiki (http://pdbwiki.org)

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