4P22 Crystal Structure of N-terminal Fragments of E1 date
authors Xie, S.T.
compound source
symmetry
R_factor
R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.75
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceExpression, purification, and crystal structure of N-terminal domains of human ubiquitin-activating enzyme (E1)., Xie ST, Biosci Biotechnol Biochem. 2014;78(9):1542-9. doi: 10.1080/09168451.2014.923301. , Epub 2014 Jun 9. PMID:25209502
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk]
  • Biological Unit Coordinates (4p22.pdb1.gz) 235 Kb
  • CSU: Contacts of Structural Units for 4P22
  • Structure Factors (481 Kb)
  • Retrieve 4P22 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P22 from S2C, [Save to disk]
  • Re-refined 4p22 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4P22 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4P22
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P22, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p22_A] [4p22_B] [4p22]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4P22
  • Community annotation for 4P22 at PDBWiki (http://pdbwiki.org)

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