4P2R	Crystal structure of the 5cc7 TCR in complex with 5c1/I-Ek	date
authors	Birnbaum, M.E., Ozkan, E., Garcia, K.C.
compound		source
symmetry		R_factor R_Free 0.2431
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.29
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component F, A, P, K Q, G, L, B
Primary reference	Deconstructing the Peptide-MHC Specificity of T Cell Recognition., Birnbaum ME, Mendoza JL, Sethi DK, Dong S, Glanville J, Dobbins J, Ozkan E, Davis MM, Wucherpfennig KW, Garcia KC, Cell. 2014 May 22;157(5):1073-87. doi: 10.1016/j.cell.2014.03.047. PMID:24855945

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1109 Kb) [Save to disk] Biological Unit Coordinates (4p2r.pdb1.gz) 277 Kb Biological Unit Coordinates (4p2r.pdb2.gz) 279 Kb Biological Unit Coordinates (4p2r.pdb3.gz) 279 Kb Biological Unit Coordinates (4p2r.pdb4.gz) 281 Kb LPC: Ligand-Protein Contacts for 4P2R CSU: Contacts of Structural Units for 4P2R Structure Factors (4815 Kb) Retrieve 4P2R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4P2R from S2C, [Save to disk] Re-refined 4p2r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4P2R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4P2R

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4P2R, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4p2r_L] [4p2r_N] [4p2r_M] [4p2r_K] [4p2r_O] [4p2r_C] [4p2r] [4p2r_E] [4p2r_P] [4p2r_A] [4p2r_T] [4p2r_F] [4p2r_J] [4p2r_I] [4p2r_B] [4p2r_R] [4p2r_Q] [4p2r_H] [4p2r_S] [4p2r_G] [4p2r_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4P2R: [IG] [IG_like] [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART

Other resources with information on 4P2R

Community annotation for 4P2R at PDBWiki (http://pdbwiki.org)

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