4P2S Alanine Scanning Mutagenesis Identifies an Asparagine-Arginine-Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment date
authors Sinha, S., Cheng, S., Sung, Y.W., McNamara, D.E., Sawaya, M.R., Yeates, T.O., Bobik, T.A.
compound source
symmetry
R_factor
R_Free 0.2090
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.94
ligand GOL, SO4, TRS enzyme
Gene SES26
Primary referenceAlanine Scanning Mutagenesis Identifies an Asparagine-Arginine-Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment., Sinha S, Cheng S, Sung YW, McNamara DE, Sawaya MR, Yeates TO, Bobik TA, J Mol Biol. 2014 Apr 18. pii: S0022-2836(14)00196-X. doi:, 10.1016/j.jmb.2014.04.012. PMID:24747050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (4p2s.pdb1.gz) 161 Kb
  • Biological Unit Coordinates (4p2s.pdb2.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 4P2S
  • CSU: Contacts of Structural Units for 4P2S
  • Structure Factors (1618 Kb)
  • Retrieve 4P2S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P2S from S2C, [Save to disk]
  • Re-refined 4p2s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4P2S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4P2S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P2S, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p2s_F] [4p2s_I] [4p2s_H] [4p2s_E] [4p2s_C] [4p2s] [4p2s_A] [4p2s_D] [4p2s_G] [4p2s_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4P2S: [BMC ] by SMART
    • Other resources with information on 4P2S
  • Community annotation for 4P2S at PDBWiki (http://pdbwiki.org)

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