4P2Y Crystal structure of the human RAGE ectodomain (fragment VC1C2) in complex with mouse S100A6 date
authors Yatime, L., Andersen, G.R.
compound source
symmetry
R_factor
R_Free 0.2067
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand ACT, CA, CL, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • ion transmembrane transporte...


    • Primary referenceThe Structure of the RAGE:S100A6 Complex Reveals a Unique Mode of Homodimerization for S100 Proteins., Yatime L, Betzer C, Jensen RK, Mortensen S, Jensen PH, Andersen GR, Structure. 2016 Dec 6;24(12):2043-2052. doi: 10.1016/j.str.2016.09.011. Epub 2016, Nov 3. PMID:27818100
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (4p2y.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (4p2y.pdb2.gz) 515 Kb
  • Biological Unit Coordinates (4p2y.pdb3.gz) 259 Kb
  • LPC: Ligand-Protein Contacts for 4P2Y
  • CSU: Contacts of Structural Units for 4P2Y
  • Structure Factors (242 Kb)
  • Retrieve 4P2Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P2Y from S2C, [Save to disk]
  • Re-refined 4p2y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4P2Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4P2Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P2Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p2y] [4p2y_A] [4p2y_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4P2Y: [IG_like] [IGc2] [S_100 ] by SMART
    • Other resources with information on 4P2Y
  • Community annotation for 4P2Y at PDBWiki (http://pdbwiki.org)

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