4P57 MHC TCR peptide complex date
authors Clayton, G.M., Crawford, F., Kappler, J.W.
compound source
symmetry
R_factor
R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand CA, GOL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceStructural basis of chronic beryllium disease: linking allergic hypersensitivity and autoimmunity., Clayton GM, Wang Y, Crawford F, Novikov A, Wimberly BT, Kieft JS, Falta MT, Bowerman NA, Marrack P, Fontenot AP, Dai S, Kappler JW, Cell. 2014 Jul 3;158(1):132-42. doi: 10.1016/j.cell.2014.04.048. PMID:24995984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (4p57.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (4p57.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 4P57
  • CSU: Contacts of Structural Units for 4P57
  • Structure Factors (290 Kb)
  • Retrieve 4P57 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P57 from S2C, [Save to disk]
  • Re-refined 4p57 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4P57 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4P57
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P57, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p57_A] [4p57_C] [4p57_D] [4p57] [4p57_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4P57: [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART
    • Other resources with information on 4P57
  • Community annotation for 4P57 at PDBWiki (http://pdbwiki.org)

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